The ABC2 Dataset


Trajectories of the 39 DNA oligomers generated by the Ascona B-DNA Consortium,
in the highly-compressed "PCAZIP" format. Trajectories correspond to 50ns of
simulation (50,000 snapshots), and contain just DNA atoms (no solvent or ions)

For full details of the project please see the official ABC Website

For details of the compression method please read Meyer et al JCTC 2006, 2, 251-258

Source code (fortran90) for the uncompressor is avalable here

Instructions on how to compile and use it are available here

AAAA_noions.pczAAAA_noions.pdb AAAC_noions.pczAAAC_noions.pdb
AAAT_noions.pczAAAT_noions.pdb AGAG_noions.pczAGAG_noions.pdb
AGCG_noions.pczAGCG_noions.pdb AGCT_noions.pczAGCT_noions.pdb
AGGA_noions.pczAGGA_noions.pdb AGGC_noions.pczAGGC_noions.pdb
AGGT_noions.pczAGGT_noions.pdb AGTC_noions.pczAGTC_noions.pdb
AGTG_noions.pczAGTG_noions.pdb ATGC_noions.pczATGC_noions.pdb
CAAG_noions.pczCAAG_noions.pdb CAAT_noions.pczCAAT_noions.pdb
CGCG_noions.pczCGCG_noions.pdb CGGA_noions.pczCGGA_noions.pdb
CGGC_noions.pczCGGC_noions.pdb CGGT_noions.pczCGGT_noions.pdb
CGTA_noions.pczCGTA_noions.pdb CGTG_noions.pczCGTG_noions.pdb
GAAA_noions.pczGAAA_noions.pdb GAAC_noions.pczGAAC_noions.pdb
GAAT_noions.pczGAAT_noions.pdb GATA_noions.pczGATA_noions.pdb
GGGA_noions.pczGGGA_noions.pdb GGGC_noions.pczGGGC_noions.pdb
GGGG_noions.pczGGGG_noions.pdb GGGT_noions.pczGGGT_noions.pdb
TAAC_noions.pczTAAC_noions.pdb TAAG_noions.pczTAAG_noions.pdb
TAAT_noions.pczTAAT_noions.pdb TATA_noions.pczTATA_noions.pdb
TCGA_noions.pczTCGA_noions.pdb TGGA_noions.pczTGGA_noions.pdb
TGGC_noions.pczTGGC_noions.pdb TGGT_noions.pczTGGT_noions.pdb
TGTA_noions.pczTGTA_noions.pdb TGTC_noions.pczTGTC_noions.pdb
TGTG_noions.pczTGTG_noions.pdb

Charlie Laughton, January 2012