Interactive Chromatin Modeling
ICM   ~   I see 'em
details
Nucleic Acids Res. 2010 38:W254-W261.
DOI:10.1093/nar/gkq496
Sequence Input Options:
Default Sequence Type Sequence Upload Sequence


This option uses the default sequence.
GenBank #V01175: the GR MMTV LTR.


This option allows for sequence input.

Please insert your sequence:

Try one of our samples below or search PubMed

References


This option allows a sequence selection to be uploaded.

Choose a DNA sequence to upload:


Thermal Fluctuation:
This option controls the level of thermal fluctuation.

Temperature: What is this? Kelvin
Nucleosome Placement Options
Use Default Parameters Use Energy Calculations Specify Nucleosome Placement

This option will use default values for the placement parameters.


These options control automatic placement of nucleosomes in the energy landscape.

Energy Options Enuc = ½ &sum(K(Xnuc - XDNA)2

K = What is this? References

Xnuc = What is this? References

XDNA = What is this? References
Occupancy Occupancy: What is this?

Linker Length: What is this?

This option places nucleosomes at the assigned starting positions. An energy landscape is provided, but is not used in determining nucleosome placements.

Energy Options Enuc = ½ &sum(K(Xnuc - XDNA)2

K = What is this? References

Xnuc = What is this? References

XDNA = What is this? References
Nucleosome Start Sites Positions:
What is this?


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