Interactive Chromatin Modeling
(I see em)
Input DNA Sequence Below (replace example )
AATTCCAACGAATAACTTCCAGGGATTTATAAGCCGATGACGTCATAACA TCCCTGACCCTTTAAATAGCTTAACTTTCATCAAGCAAGAGCCTACGACC ATACCATGCTGAATATACCGGTTCTCGTCCGATCACCGAAGTCAAGCAGC ATAGGGCTCGGTTAGTACTTGGATGGGAGACCGCCTGGGAATACCGGGTG TTGTAGGCTTTTTTTTCTCCCCCCCCCCCCTCTTTGCTTCATGAAATGCC TCTTGG
Energy Options:
E
nuc
= ½ K(X - X
0
)
2
K =
MD-B.dat
XrayB.dat
XrayP.dat
idealB.dat
X =
01kx5.min.par
01kx5.par
1aoi.par
1eqz.ki.12.par
1eqz.min.par
1eqz.par
1f66.par
1kx3.min.par
1kx3.par
1kx3S.min.par
1kx3S.par
1kx5.min.par
1kx5.par
1m18.ki.12.par
1m18.min.par
1m18.par
1m19.par
1p34.par
1p3a.par
1p3b.par
1p3f.par
1p3g.par
1p3i.ki.12.par
1p3i.min.par
1p3i.par
1p3k.par
1p3l.ki.12.par
1p3l.min.par
1p3l.par
1p3m.par
1p3o.par
1p3p.par
1s32.par
ki-01.par
ki-02.par
ki-03.par
ki-04.par
ki-05.par
ki-06.par
ki-07.par
ki-08.par
ki-09.par
ki-10.par
ki-11.par
ki-12.par
ki-13.par
ki-14.par
ki-15.par
ki-16.par
ki-17.par
ki-18.par
ki-19.par
ki-20.par
ki-21.par
ki-22.par
ki-23.par
ki-24.par
ki-25.par
ki-26.par
ki-27.par
ki-28.par
ki-29.par
ki-30.par
ki-31.par
ki-32.par
ki-33.par
ki-34.par
ki-35.par
ki-36.par
ki-37.par
ki-38.par
ki-39.par
ki-40.par
ki-41.par
ki-42.par
ki-43.par
ki-44.par
ki-45.par
ki-46.par
ki-47.par
ki-48.par
ki-49.par
ki-50.par
ki-51.par
ki-52.par
ki-53.par
ki-54.par
ki-55.par
ki-56.par
ki-57.par
ki-58.par
ki-59.par
ki-60.par
ki-61.par
ki-62.par
ki-63.par
ki-64.par
ki-65.par
ki-66.par
ki-67.par
ki-68.par
ki-69.par
ki-70.par
ki-71.par
ki-72.par
ki-73.par
ki-74.par
ko-01.par
ko-02.par
ko-03.par
ko-04.par
ko-05.par
ko-06.par
ko-07.par
ko-08.par
ko-09.par
ko-10.par
ko-11.par
ko-12.par
ko-13.par
ko-14.par
ko-15.par
ko-16.par
ko-17.par
ko-18.par
ko-19.par
ko-20.par
ko-21.par
ko-22.par
ko-23.par
ko-24.par
ko-25.par
ko-26.par
ko-27.par
ko-28.par
ko-29.par
ko-30.par
ko-31.par
ko-32.par
ko-33.par
ko-34.par
ko-35.par
ko-36.par
ko-37.par
ko-38.par
ko-39.par
ko-40.par
ko-41.par
ko-42.par
ko-43.par
ko-44.par
ko-45.par
ko-46.par
ko-47.par
ko-48.par
ko-49.par
ko-50.par
ko-51.par
ko-52.par
ko-53.par
ko-54.par
ko-55.par
ko-56.par
ko-57.par
ko-58.par
ko-59.par
ko-60.par
ko-61.par
ko-62.par
ko-63.par
ko-64.par
ko-65.par
ko-66.par
ko-67.par
ko-68.par
ko-69.par
ko-70.par
ko-71.par
ko-72.par
ko-73.par
ko-74.par
X
0
=
MD-B.par
XrayB.par
XrayP.par
idealB.par
Occupancy:
Nucleosomes:
number:
n < 1 is a percentage
n = 0 is constant spacing.
n < 0 is constant spacing + shift.
Linker:
length:
To upload sequence instead of pasting, click the button below.
Test Sequences
5S_dimer.t
5SrDNA.txt
601.txt
601_232.tx
601n.txt
61.txt
67.txt
67PC94_9.t
Ander-20.t
Ander-47.t
Ander-51.t
Ander-53.t
Ander-56.t
Ander-57.t
Ander-61-1
Ander-61-1
Ander-61.t
Ander-67-1
Ander-67-2
Ander-67-3
Ander-67-4
Ander-67-5
Ander-67-6
Ander-67-7
Ander-67-8
Ander-67-9
Ander-67.t
Ander-77.t
C-Badsecs-
C-Badsecs-
C-TGA.txt
C-TGGA-1.t
C-TGGA-2.t
C-TGGA-3.t
CAGa.txt
CAGb.txt
CAa.txt
CAb.txt
CRITBamH1-
D_KlCEN1.t
D_SCEN6.tx
Fern2007_6
GT10_183.t
GW_H4.txt
GW_H4DCTG.
GW_H4DCTG_
Insert_Fer
Insert_Fer
Insert_Fer
Insert_Fer
Insert_Fer
Insert_Fer
Insert_Fer
Insert_Fer
Insert_Fer
Insert_Fer
Insert_Fer
Insert_Fer
Insert_Fer
KlCEN1.txt
KlCEN2-199
KlCEN3-198
KlCEN4.txt
LW_618.txt
MMTV-V0117
NoSeqa.txt
NoSeqb.txt
R-telo-Ara
R-telo-Cer
R-telo-Hom
R-telo-Tet
SC_19.txt
SC_20.txt
SC_22.txt
SC_34.txt
SC_AEXT.tx
SC_ANISO.t
SC_ANNA.tx
SC_AOUT.tx
SC_END.txt
SC_EXAT.tx
SC_EXGC.tx
SC_FIN.txt
SC_GT.txt
SC_IAT.txt
SC_IGC.txt
SC_TG.txt
SC_TIATR.t
SC_TRGC.tx
SC_TTT.txt
Simp1983.5
TAND1.txt
TATAa.txt
TATAb.txt
TEL-HL254.
Thas2004_p
Tols2007-5
Tols2007-6
Tols2007-c
Tols2007-p
Virs2004-c
Virs2004-c
Virs2004-n
Virs2004-t
W_CGG13.tx
W_CGG74.tx
W_CTG10.tx
W_CTG55.tx
W_CTG62.tx
Wd_A-TRACT
Wd_CA-runs
Wd_CAG-run
Wd_M-min-s
Wd_NoSecs-
Wd_TATA.tx
Widom-601.
Xensom5S.t
tel-Kluyv.
telhuman22
telo-Bombi
telo-C_rei
telo-homo2
telo-homo4
telo_Arab2
xenbor5s.t