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<h2>
VDNA: Virtual DNA for 
<a href="http://www.ks.uiuc.edu/Research/vmd/"  target="blank" >VMD</a> 
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Current Version 2.2 
<br>
Directions: 
<br>
<a href="https://dna.engr.latech.edu/vdna/vdna.tcl" target="main" class="style2">Download VDNA</a>
 Save it as vdna.tcl. Then source it on 
<a href="http://www.ks.uiuc.edu/Research/vmd/" target="blank" class="style2">VMD's</a>
command line (source vdna.tcl).

<br>
<br>
Please reference 
<br>
<br>
<a href="http://bioinformatics.oxfordjournals.org/cgi/content/short/25/23/3187" target="blank" > "VDNA: The virtual DNA plug-in for VMD" </a>
<br>
Bioinformatics 2009 25(23), 3187-3188; doi:10.1093/bioinformatics/btp566. 

<br>
<br>
Other nifty tools and resources from our lab.
<br>
<br>
Web tools for making 
sequence dependent models of DNA 
<a href="https://dna.engr.latech.edu/freedna/freedna.php" target="main" class="style2">(free DNA)</a>
and
for Interactive Chromatin  Modeling
<a href="https://dna.engr.latech.edu/icm/" target="main" class="style2">(ICM)</a>


<br>
<br>
Send your favorite mathematical expressions to me and I'll start an 
image collection.
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<td>
<p style="text-align: center;"><img
 style="width: 150px; height: 165px;"
 alt="Twist Propagation"
 src="untwist.jpg "></p>
<td>

<td>
<p style="text-align: center;"><img
 style="width: 150px; height: 165px;"
 alt="Circular Image"
 src="circular.jpg "></p>

<td>
<p style="text-align: center;"><img
 style="width: 150px; height: 165px;"
 alt="Trinucleosomes Image"
 src="tri-nucs.jpg "></p>

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<p style="text-align: center;"><img
 style="width: 150px; height: 165px;"
 alt="Chromatin Image"
 src="chromatin.jpg "></p>

</tr>
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<p style="text-align: center;"><img
 style="width: 485px; height: 170px;"
 alt="Advanced Models"
 src="advanced.jpg "></p>

<p style="text-align: center;"><img
 style="width: 600px; height: 500px;"
 alt="VDNA Overview Image"
 src="overview.jpg "></p>


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